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    LOC4339121 putative GPI-anchored protein pfl2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339121, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4339121
    Gene description
    putative GPI-anchored protein pfl2
    Locus tag
    OSNPB_050480600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 18.3), flower buds (RPKM 8.5) and 5 other tissues See more
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    Genomic context

    See LOC4339121 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (23737088..23741249, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23622725..23627029, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STN8, chloroplastic Neighboring gene thioredoxin H5-like Neighboring gene probable inactive receptor kinase At5g58300 Neighboring gene uncharacterized LOC107281127 Neighboring gene V-type proton ATPase subunit E2 Neighboring gene uncharacterized LOC136351190

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    putative GPI-anchored protein pfl2
    Names
    Os05g0480600
    mucin-5AC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      23737088..23741249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025633.2XP_025881418.1  putative GPI-anchored protein pfl2

      UniProtKB/TrEMBL
      A0A0P0WNN9, B8AZA7, B9FKS8, Q75GL8
      Conserved Domains (2) summary
      PHA03247
      Location:110405
      PHA03247; large tegument protein UL36; Provisional
      COG3889
      Location:34177
      COG3889; Predicted periplasmic protein [Function unknown]
    2. XM_015784779.3XP_015640265.1  putative GPI-anchored protein pfl2

      UniProtKB/TrEMBL
      A0A0P0WNN9, B8AZA7, B9FKS8, Q75GL8
      Conserved Domains (2) summary
      PHA03247
      Location:110405
      PHA03247; large tegument protein UL36; Provisional
      COG3889
      Location:34177
      COG3889; Predicted periplasmic protein [Function unknown]