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    LOC4345728 AT-rich interactive domain-containing protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345728, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345728
    Gene description
    AT-rich interactive domain-containing protein 4
    Locus tag
    OSNPB_080451400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1005_H01.35
    Expression
    Ubiquitous expression in roots after flowering (RPKM 21.8), leaves after flowering (RPKM 19.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345728 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22177533..22187277, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22038830..22048728, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272028 Neighboring gene protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like Neighboring gene AT-rich interactive domain-containing protein 4 Neighboring gene AT-rich interactive domain-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4
    Names
    Os08g0451400
    fiber protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22177533..22187277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795079.3 → XP_015650565.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins

    2. XM_015795081.3 → XP_015650567.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins

    3. XM_015795083.3 → XP_015650569.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins

    4. XM_015795082.3 → XP_015650568.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins

    5. XM_015795085.3 → XP_015650571.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins

    6. XM_015795084.3 → XP_015650570.1  AT-rich interactive domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0XGL5, B8BB96, B9G177, Q0J5A5
      Conserved Domains (2) summary
      smart01014
      Location:576 → 673
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:683 → 734
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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