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    LOC4344741 LOB domain-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344741, updated on 26-Aug-2022

    Summary

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    Gene symbol
    LOC4344741
    Gene description
    LOB domain-containing protein 1
    Locus tag
    OSNPB_080163700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4344741 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3746193..3749883)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase sigma factor sigA Neighboring gene uncharacterized LOC4344739 Neighboring gene uncharacterized LOC112939898 Neighboring gene uncharacterized LOC112936228 Neighboring gene uncharacterized LOC4344742

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    LOB domain-containing protein 1
    Names
    Os08g0163700
    Os08g0163800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3746193..3749883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794036.2 → XP_015649522.1  LOB domain-containing protein 1

      UniProtKB/TrEMBL
      A0A0N7KPB7, Q0J7T3
      Conserved Domains (1) summary
      pfam03195
      Location:44 → 119
      DUF260; Protein of unknown function DUF260
    Nucleotide Protein
    Heading Accession and Version

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