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    LOC4339599 trihelix transcription factor ENAP2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339599, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339599
    Gene description
    trihelix transcription factor ENAP2
    Locus tag
    OSNPB_050560600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 212.5), flowers (RPKM 20.3) and 3 other tissues See more
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    Genomic context

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    See LOC4339599 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28083821..28087268)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27899060..27902502)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein MALE DISCOVERER 2 Neighboring gene tubby-like F-box protein 10 Neighboring gene uncharacterized LOC4339598 Neighboring gene gibberellin 2-beta-dioxygenase 3-like Neighboring gene uncharacterized LOC107276357

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trihelix transcription factor ENAP2
    Names
    Os05g0560600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28083821..28087268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784323.3 → XP_015639809.1  trihelix transcription factor ENAP2

      UniProtKB/TrEMBL
      A0A0P0WQV8, A2Y7E5, B9FHY0, Q688Y5
      Conserved Domains (1) summary
      pfam13837
      Location:38 → 124
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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