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    LOC4324642 uncharacterized LOC4324642 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324642, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324642
    Gene description
    uncharacterized LOC4324642
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 3.5), roots before flowering (RPKM 3.2) and 6 other tissues See more
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    Genomic context

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    See LOC4324642 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6568636..6569768)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6557144..6560028)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355745 Neighboring gene uncharacterized LOC136354939 Neighboring gene endoglucanase 2-like Neighboring gene uncharacterized LOC4324644

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324642

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6568636..6569768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022530.2 → XP_025878315.2  uncharacterized protein LOC4324642

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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