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    LOC221946 uncharacterized LOC221946 [ Homo sapiens (human) ]

    Gene ID: 221946, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC221946
    Gene description
    uncharacterized LOC221946
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC221946 in Genome Data Viewer
    Location:
    7p22.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (5513854..5525545)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (5631373..5643068)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (5553485..5565176)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 18 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:5526631-5527352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:5528075-5528796 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25581 Neighboring gene microRNA 589 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5549867-5550805 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17916 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:5552897-5553483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5553484-5554070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5554071-5554656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25584 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25585 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5567118-5567988 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5567989-5568858 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5568859-5569728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5573209-5574078 Neighboring gene actin beta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25597 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:5586399-5586898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5593001-5593846 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5594693-5595538 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5595539-5596384 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:5597701-5598249 Neighboring gene S100 calcium binding protein A11 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126168.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006483, BC033371

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      5513854..5525545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      5631373..5643068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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