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    LOC4337888 probable GTP diphosphokinase CRSH1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337888, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337888
    Gene description
    probable GTP diphosphokinase CRSH1, chloroplastic
    Locus tag
    OSNPB_050161200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CRSH1; RELA2; OsCRSH1; Os-RelA2; OsJ_17215
    Expression
    Broad expression in roots after flowering (RPKM 11.7), leaves after flowering (RPKM 8.9) and 5 other tissues See more
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    Genomic context

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    See LOC4337888 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3626349..3630218)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3607508..3611374)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337885 Neighboring gene DNA polymerase epsilon subunit B Neighboring gene uncharacterized LOC4337889 Neighboring gene probable GTP diphosphokinase CRSH2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in guanosine tetraphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTP diphosphokinase CRSH1, chloroplastic
    Names
    Calcium-activated RelA/Spot homolog 1
    LOC_Os05g06890
    OSJNBa0034O12.15
    chloroplast RelA homologue 2
    ppGpp synthetase CRSH1
    NP_001407021.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420092.1 → NP_001407021.1  GTP diphosphokinase CRSH1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK121808, CB673651, CI381665
      UniProtKB/Swiss-Prot
      A0A0P0WIB5, Q6ATB4, Q9AYT4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3626349..3630218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ATB4.1 GenPept UniProtKB/Swiss-Prot:Q6ATB4

    Gene LinkOut

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