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    LOC4331903 calmodulin-binding transcription activator 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331903, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331903
    Gene description
    calmodulin-binding transcription activator 2
    Locus tag
    OSNPB_030191000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 50.2), leaves after flowering (RPKM 42.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331903 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4737550..4745412, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4726162..4734018, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 3 Neighboring gene uncharacterized LOC4331902 Neighboring gene probable mitochondrial adenine nucleotide transporter BTL3 Neighboring gene uncharacterized LOC4331905

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding transcription activator 2
    Names
    Os03g0191000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4737550..4745412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308643.1 → XP_066164740.1  calmodulin-binding transcription activator 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VUC2, Q0DUE4, Q10QM9

    2. XM_066308645.1 → XP_066164742.1  calmodulin-binding transcription activator 2 isoform X3

      UniProtKB/TrEMBL
      Q10QM9

    3. XM_066308644.1 → XP_066164741.1  calmodulin-binding transcription activator 2 isoform X2

      UniProtKB/TrEMBL
      Q10QM9

    4. XM_066308646.1 → XP_066164743.1  calmodulin-binding transcription activator 2 isoform X3

      UniProtKB/TrEMBL
      Q10QM9
    Nucleotide Protein
    Heading Accession and Version

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