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    LOC4345249 exocyst complex component SEC8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345249, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345249
    Gene description
    exocyst complex component SEC8
    Locus tag
    OSNPB_080318500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 44.2), leaves after flowering (RPKM 34.7) and 6 other tissues See more
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    Genomic context

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    See LOC4345249 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (13807816..13832830, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13740484..13765529, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281933 Neighboring gene uncharacterized LOC4345248 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136351553

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle tethering involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exocyst complex component SEC8
    Names
    Os08g0318500
    P0406D01.114
    exocyst complex component Sec8-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      13807816..13832830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794420.3 → XP_015649906.1  exocyst complex component SEC8 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XE61, B8B9P4, C8TFC0, Q69PQ1
      Conserved Domains (1) summary
      pfam04048
      Location:22 → 157
      Sec8_exocyst; Sec8 exocyst complex component specific domain

    2. XM_015794419.3 → XP_015649905.1  exocyst complex component SEC8 isoform X1

      UniProtKB/TrEMBL
      B8B9P4
      Conserved Domains (1) summary
      pfam04048
      Location:22 → 158
      Sec8_exocyst; Sec8 exocyst complex component specific domain
    Nucleotide Protein
    Heading Accession and Version

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