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    LOC4330972 RING-H2 finger protein ATL13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330972, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4330972
    Gene description
    RING-H2 finger protein ATL13
    Locus tag
    OSNPB_020790600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1046_F07.20
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    Genomic context

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    See LOC4330972 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34075695..34077621, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33579589..33581497, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330970 Neighboring gene uncharacterized LOC136355346 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 Neighboring gene uncharacterized LOC136355347 Neighboring gene probable E3 ubiquitin-protein ligase XBOS32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL13
    Names
    Os02g0790600
    putative RING finger 1
    putative RING-H2 finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34075695..34077621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768678.3 → XP_015624164.1  RING-H2 finger protein ATL13

      UniProtKB/TrEMBL
      A2XAF5, Q0DWW8, Q6KAF1
      Conserved Domains (2) summary
      COG5432
      Location:123 → 214
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd16454
      Location:122 → 165
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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