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    LOC4326739 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326739, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4326739
    Gene description
    3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like
    Locus tag
    OSNPB_010225400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PANB1; KPHMT1; P0443E07.6
    Expression
    Ubiquitous expression in flowers (RPKM 5.3), flower buds (RPKM 5.3) and 6 other tissues See more
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    Genomic context

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    See LOC4326739 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6909713..6912241, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene GTPase Der Neighboring gene uncharacterized LOC4326738 Neighboring gene 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial Neighboring gene late embryogenesis abundant protein Lea14-A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pantothenate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial
    Names
    Ketopantoate hydroxymethyltransferase 1
    LOC_Os01g12560
    P0492F05.15
    putative 3-methyl-2-oxobutanoate hydroxymethyltransferase
    XP_015629790.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398291.1 → NP_001385220.1  3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CB642541, CB650292, CI227197
      UniProtKB/Swiss-Prot
      Q0JPF4, Q9AWZ8
      UniProtKB/TrEMBL
      A2WM98
      Conserved Domains (1) summary
      PLN02424
      Location:20 → 341
      PLN02424; ketopantoate hydroxymethyltransferase

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6909713..6912241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774304.2 → XP_015629790.1  3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial

      UniProtKB/Swiss-Prot
      Q9AWZ8
      Conserved Domains (1) summary
      PLN02424
      Location:20 → 341
      PLN02424; ketopantoate hydroxymethyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AWZ8.1 GenPept UniProtKB/Swiss-Prot:Q9AWZ8

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