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    LOC4324643 endoglucanase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324643, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324643
    Gene description
    endoglucanase 2-like
    Locus tag
    OSNPB_010220100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLU5; OsGLU5; OsCel9A; OsJ_000889
    Expression
    Biased expression in flowers (RPKM 5.9), flower buds (RPKM 3.3) and 1 other tissue See more
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    Genomic context

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    See LOC4324643 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6574440..6577898, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6564670..6568160, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354939 Neighboring gene uncharacterized LOC4324642 Neighboring gene uncharacterized LOC4324644 Neighboring gene uncharacterized LOC4324645

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endoglucanase 2
    Names
    Endo-1,4-beta glucanase 2
    LOC_Os01g12070
    P0483F08.13
    P0489G09.28
    putative endo-beta-1,4-glucanase
    NP_001415074.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428145.1 → NP_001415074.1  endoglucanase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK103304, CI190385, CI495086
      UniProtKB/Swiss-Prot
      A0A0P0V072, A0P889, Q0JPJ1, Q5NAT0
      UniProtKB/TrEMBL
      A2WM56

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6574440..6577898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NAT0.1 GenPept UniProtKB/Swiss-Prot:Q5NAT0

    Gene LinkOut

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