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    LOC4327530 protein VAPYRIN [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327530, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4327530
    Gene description
    protein VAPYRIN
    Locus tag
    OSNPB_010829100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0446G04.2
    Expression
    Broad expression in flowers (RPKM 3.2), roots before flowering (RPKM 1.5) and 5 other tissues See more
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    Genomic context

    See LOC4327530 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36104928..36107076, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35480042..35482395, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein G1-like7 Neighboring gene thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC9271335

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    protein VAPYRIN
    Names
    B1088C09.29
    Os01g0829100
    protein kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36104928..36107076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788202.3XP_015643688.1  protein VAPYRIN

      UniProtKB/TrEMBL
      A0A0P0V9Z3, A2Z5H4, A2ZZ72, Q941V9
      Conserved Domains (4) summary
      PLN03192
      Location:198337
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:313345
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:286376
      Ank_2; Ankyrin repeats (3 copies)
      cl27657
      Location:40125
      Motile_Sperm; MSP (Major sperm protein) domain