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    LOC4345227 protein SMG7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345227, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345227
    Gene description
    protein SMG7
    Locus tag
    OSNPB_080305300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 55.8), leaves after flowering (RPKM 47.6) and 6 other tissues See more
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    Genomic context

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    See LOC4345227 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (12724300..12732713, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene formamidopyrimidine-DNA glycosylase Neighboring gene zinc finger protein 414-like Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SMG7
    Names
    OSJNBa0051M20.128
    OSJNBa0058D03.118
    Os08g0305300
    putative cig3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      12724300..12732713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794551.2 → XP_015650037.1  protein SMG7 isoform X2

      UniProtKB/TrEMBL
      B8B9J0, B9G082
      Conserved Domains (3) summary
      sd00006
      Location:182 → 205
      TPR; TPR repeat [structural motif]
      pfam10373
      Location:199 → 531
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:70 → 184
      EST1; Telomerase activating protein Est1

    2. XM_015794550.2 → XP_015650036.1  protein SMG7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XE96, Q0J6K0, Q69RW4, Q69S02
      Conserved Domains (3) summary
      sd00006
      Location:182 → 205
      TPR; TPR repeat [structural motif]
      pfam10373
      Location:199 → 535
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:70 → 184
      EST1; Telomerase activating protein Est1

    3. XM_015794549.2 → XP_015650035.1  protein SMG7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XE96, Q0J6K0, Q69RW4, Q69S02
      Conserved Domains (3) summary
      sd00006
      Location:182 → 205
      TPR; TPR repeat [structural motif]
      pfam10373
      Location:199 → 535
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:70 → 184
      EST1; Telomerase activating protein Est1
    Nucleotide Protein
    Heading Accession and Version

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