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    LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327529, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4327529
    Gene description
    thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic
    Locus tag
    OSNPB_010829000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MRL7; OsMRL7; P0446G04.1
    Expression
    Broad expression in leaves before flowering (RPKM 37.1), flower buds (RPKM 14.0) and 4 other tissues See more
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    Genomic context

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    See LOC4327529 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35477346..35479520)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase PMT23 Neighboring gene protein G1-like7 Neighboring gene receptor-interacting serine/threonine-protein kinase 4 Neighboring gene transfer RNA glycine (anticodon UCC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic
    Names
    B1088C09.28
    LOC_Os01g61320
    Os01g0829000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409126.1 → NP_001396055.1  thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065327, AP014957, CI306596, CI415320
      UniProtKB/Swiss-Prot
      Q5QLS7
      UniProtKB/TrEMBL
      A2Z5H3, A2ZZ71

    2. NM_001409127.1 → NP_001396056.1  thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065327, AP014957, CI057122, CI306596
      UniProtKB/Swiss-Prot
      Q5QLS7
      UniProtKB/TrEMBL
      A2Z5H3, A2ZZ71

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35477346..35479520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022228.1 → XP_025878013.1  thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic

      UniProtKB/Swiss-Prot
      Q5QLS7
      UniProtKB/TrEMBL
      A2Z5H3, A2ZZ71

    RNA

    1. XR_003240099.1 RNA Sequence

    2. XR_003240098.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5QLS7.1 GenPept UniProtKB/Swiss-Prot:Q5QLS7

    Gene LinkOut

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