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    LOC4333666 BTB/POZ domain and ankyrin repeat-containing protein NPR3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333666, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4333666
    Gene description
    BTB/POZ domain and ankyrin repeat-containing protein NPR3-like
    Locus tag
    OSNPB_030667100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NH3; NPR3; OsNPR3; OsJ_12014
    Expression
    Broad expression in roots before flowering (RPKM 61.3), leaves after flowering (RPKM 41.8) and 4 other tissues See more
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    Genomic context

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    See LOC4333666 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26259730..26267345, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268413 Neighboring gene glutathione S-transferase T3 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like Neighboring gene fe(2+) transport protein 2-like Neighboring gene protein WHAT'S THIS FACTOR 1 homolog Neighboring gene fe(2+) transport protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight. Jiang G, et al. Sci Rep, 2020 Apr 14. PMID 32286394, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight.
      Title: OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in systemic acquired resistance, salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain and ankyrin repeat-containing protein NPR3
    Names
    LOC_Os03g46440
    OSJNBa0056E06.6
    Os03g0667100
    ankyrin-repeat protein
    bTB/POZ domain and ankyrin repeat-containing protein NPR3
    putative NPR1-like protein 3
    regulatory protein NPR3

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402198.1 → NP_001389127.1  BTB/POZ domain and ankyrin repeat-containing protein NPR3

      Status: VALIDATED

      Source sequence(s)
      AK065952, CI049207, CI236615, CI304433
      UniProtKB/Swiss-Prot
      Q75HA6, Q75HA7, Q75HA8
      UniProtKB/TrEMBL
      A2XKE1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26259730..26267345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024056.1 → XP_025879841.1  BTB/POZ domain and ankyrin repeat-containing protein NPR3 isoform X3

      Conserved Domains (5) summary
      sd00045
      Location:293 → 321
      ANK; ANK repeat [structural motif]
      pfam11900
      Location:222 → 266
      DUF3420; Domain of unknown function (DUF3420)
      cd18310
      Location:32 → 187
      BTB_POZ_NPR_plant; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins
      pfam12313
      Location:365 → 556
      NPR1_like_C; NPR1/NIM1 like defense protein C terminal
      pfam12796
      Location:265 → 350
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_015776530.2 → XP_015632016.1  BTB/POZ domain and ankyrin repeat-containing protein NPR3 isoform X2

      UniProtKB/Swiss-Prot
      Q75HA6
      Conserved Domains (5) summary
      sd00045
      Location:293 → 321
      ANK; ANK repeat [structural motif]
      pfam11900
      Location:222 → 266
      DUF3420; Domain of unknown function (DUF3420)
      cd18310
      Location:32 → 187
      BTB_POZ_NPR_plant; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins
      pfam12313
      Location:365 → 556
      NPR1_like_C; NPR1/NIM1 like defense protein C terminal
      pfam12796
      Location:265 → 350
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_015776529.2 → XP_015632015.1  BTB/POZ domain and ankyrin repeat-containing protein NPR3 isoform X1

      UniProtKB/Swiss-Prot
      Q75HA6
      Conserved Domains (5) summary
      sd00045
      Location:293 → 321
      ANK; ANK repeat [structural motif]
      pfam11900
      Location:222 → 266
      DUF3420; Domain of unknown function (DUF3420)
      cd18310
      Location:32 → 187
      BTB_POZ_NPR_plant; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins
      pfam12313
      Location:365 → 556
      NPR1_like_C; NPR1/NIM1 like defense protein C terminal
      pfam12796
      Location:265 → 350
      Ank_2; Ankyrin repeats (3 copies)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001402215.1: Suppressed sequence

      Description
      NM_001402215.1: This RefSeq was removed because it is a duplicate.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75HA6.1 GenPept UniProtKB/Swiss-Prot:Q75HA6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.