U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4329983 receptor kinase-like protein Xa21 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329983, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4329983
    Gene description
    receptor kinase-like protein Xa21
    Locus tag
    OSNPB_020615800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LP2
    Expression
    Biased expression in roots after flowering (RPKM 3853.1), leaves after flowering (RPKM 3131.0) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4329983 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24350433..24354487)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC107279926 Neighboring gene uncharacterized LOC112937827 Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized protein At4g06744

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    receptor kinase-like protein Xa21
    Names
    Os02g0615800
    P0407A09.33
    putative protein kinase Xa21, receptor type

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24350433..24354487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767467.2 → XP_015622953.1  receptor kinase-like protein Xa21

      UniProtKB/TrEMBL
      A0A0P0VLN5, Q0DZJ2, Q6K7X0
      Conserved Domains (5) summary
      PLN00113
      Location:8 → 967
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:269 → 598
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:105 → 127
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:37 → 74
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:688 → 974
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015767468.2 → XP_015622954.1  receptor kinase-like protein Xa21

      UniProtKB/TrEMBL
      A0A0P0VLN5, Q0DZJ2, Q6K7X0
      Conserved Domains (5) summary
      PLN00113
      Location:8 → 967
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:269 → 598
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:105 → 127
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:37 → 74
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:688 → 974
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials