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    LOC4350404 pentatricopeptide repeat-containing protein At3g49240, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350404, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4350404
    Gene description
    pentatricopeptide repeat-containing protein At3g49240, mitochondrial
    Locus tag
    OSNPB_110433600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350404 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14027550..14029874)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene protein transport protein SEC23 Neighboring gene uncharacterized LOC4350405 Neighboring gene 60S ribosomal protein L38

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g49240, mitochondrial
    Names
    Os11g0433600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14027550..14029874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759670.2 → XP_015615156.1  pentatricopeptide repeat-containing protein At3g49240, mitochondrial

      UniProtKB/TrEMBL
      Q2R5L6, Q53NS3
      Conserved Domains (3) summary
      PLN03081
      Location:173 → 522
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:322 → 354
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:135 → 184
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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