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    LOC4350170 protein trichome birefringence-like 16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350170, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350170
    Gene description
    protein trichome birefringence-like 16
    Locus tag
    OSNPB_110241900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 22.4), leaves after flowering (RPKM 20.5) and 6 other tissues See more
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    Genomic context

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    See LOC4350170 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8017391..8021266, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7584423..7588357, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350169 Neighboring gene uncharacterized LOC107277040 Neighboring gene uncharacterized LOC4350171 Neighboring gene probable protein phosphatase 2C 74

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 14; protein trichome birefringence-like 16
    Names
    Os11g0241900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8017391..8021266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305470.1 → XP_066161567.1  protein trichome birefringence-like 16 isoform X3

    2. XM_015762520.2 → XP_015618006.1  protein trichome birefringence-like 16 isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y0J3, Q2R861
      Conserved Domains (2) summary
      pfam13839
      Location:161 → 446
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:106 → 160
      PMR5N; PMR5 N terminal Domain

    3. XM_015762519.2 → XP_015618005.1  protein trichome birefringence-like 14 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y0J3, Q0ITL5, Q2R860
      Conserved Domains (2) summary
      pfam13839
      Location:167 → 452
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:112 → 166
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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