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    LOC4333584 protein YABBY 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333584, updated on 6-Jun-2024

    Summary

    Gene symbol
    LOC4333584
    Gene description
    protein YABBY 2-like
    Locus tag
    OSNPB_030650000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FIL2; YAB2; YABBY; OsYAB2; OsYABBY2
    Expression
    Broad expression in flower buds (RPKM 57.6), flowers (RPKM 55.8) and 4 other tissues See more
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    Genomic context

    See LOC4333584 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25197010..25206962)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene 7-methylguanosine phosphate-specific 5'-nucleotidase A Neighboring gene uncharacterized LOC4333583 Neighboring gene flavonoid 3'-monooxygenase Neighboring gene uncharacterized LOC107278674

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    protein YABBY 2
    Names
    LOC_Os03g44710
    Protein FILAMENTOUS FLOWER 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402192.1NP_001389121.1  protein YABBY 2

      Status: VALIDATED

      Source sequence(s)
      AK070479, AU083542, CI591234, CI592040
      UniProtKB/Swiss-Prot
      Q10FZ7, Q53KW5, Q9ZSP0
      UniProtKB/TrEMBL
      A0A6S6EFG4, A0A8J8XQU8, B7EHY1, B8ANI4, B9FA23

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25197010..25206962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024326.1XP_025880111.1  protein YABBY 2

      Conserved Domains (1) summary
      pfam04690
      Location:7161
      YABBY; YABBY protein