LOC4344464 chromatin assembly factor 1 subunit FAS2 homolog [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4344464
Gene description: chromatin assembly factor 1 subunit FAS2 homolog
Locus tag: OSNPB_080108200
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: FAS2; OsJ_25768
Expression: Ubiquitous expression in leaves before flowering (RPKM 6.8), roots after flowering (RPKM 5.3) and 6 other tissues See more
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Genomic context

Location:: chromosome: 8

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	8	NC_089042.1 (400252..405157)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	8	NC_029263.1 (395215..400132)

Chromosome 8 - NC_089042.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA replication-dependent chromatin assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in nucleosome assembly	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of CAF-1 complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: chromatin assembly factor 1 subunit FAS2 homolog

Names: CAF-1 p60 homolog; CAF-1 subunit FAS2 homolog; LOC_Os08g01680; P0450B04.31; Protein FASCIATA 2 homolog; putative FAS2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422876.1 → NP_001409805.1 chromatin assembly factor 1 subunit FAS2 homolog

Status: VALIDATED

Source sequence(s)

AK121823, CI406548, CI416753, CI663360

UniProtKB/Swiss-Prot

A0A0N7KP55, Q6ZD63

UniProtKB/TrEMBL

A2YQH2