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    LOC4330268 protein ALTERED PHOSPHATE STARVATION RESPONSE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330268, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330268
    Gene description
    protein ALTERED PHOSPHATE STARVATION RESPONSE 1
    Locus tag
    OSNPB_020669900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1725_H08.36
    Expression
    Broad expression in flower buds (RPKM 2.9), milk grains (RPKM 2.4) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27689748..27694123)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27203053..27207807)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330266 Neighboring gene ASI1-immunoprecipitated protein 1 Neighboring gene protein LAZ1 Neighboring gene probable serine/threonine-protein kinase PIX13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein ALTERED PHOSPHATE STARVATION RESPONSE 1
    Names
    Os02g0669900
    P0684A08.22
    putative bZIP protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27689748..27694123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772020.3 → XP_015627506.1  protein ALTERED PHOSPHATE STARVATION RESPONSE 1

      UniProtKB/TrEMBL
      B8AGE4, B9F1K4
      Conserved Domains (2) summary
      pfam04782
      Location:341 → 637
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 53
      DUF630; Protein of unknown function (DUF630)
    Nucleotide Protein
    Heading Accession and Version

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