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    LOC4324032 plastidal glycolate/glycerate translocator 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324032, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4324032
    Gene description
    plastidal glycolate/glycerate translocator 1, chloroplastic
    Locus tag
    OSNPB_010511600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 43.0), flowers (RPKM 26.5) and 4 other tissues See more
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    Genomic context

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    See LOC4324032 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18013673..18017109, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene transcription repressor OFP7 Neighboring gene uncharacterized LOC107281399 Neighboring gene uncharacterized LOC107279866 Neighboring gene uncharacterized LOC4324034

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    plastidal glycolate/glycerate translocator 1, chloroplastic
    Names
    Os01g0511600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18013673..18017109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773000.2 → XP_015628486.1  plastidal glycolate/glycerate translocator 1, chloroplastic

      UniProtKB/TrEMBL
      B8A8X4, B9EX61
      Conserved Domains (1) summary
      pfam04172
      Location:343 → 504
      LrgB; LrgB-like family
    Nucleotide Protein
    Heading Accession and Version

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