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    LOC4348597 F-box/kelch-repeat protein At1g55270 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348597, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348597
    Gene description
    F-box/kelch-repeat protein At1g55270
    Locus tag
    OSNPB_100409900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 48.5), roots after flowering (RPKM 46.7) and 6 other tissues See more
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    Genomic context

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    See LOC4348597 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14228193..14231958, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene BURP domain-containing protein 16-like Neighboring gene dynein assembly factor 3, axonemal homolog Neighboring gene uncharacterized LOC112936557 Neighboring gene uncharacterized LOC4348598 Neighboring gene uncharacterized LOC107279210

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/kelch-repeat protein At1g55270
    Names
    Kelch-motif containing protein
    Os10g0409900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14228193..14231958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759295.2 → XP_015614781.1  F-box/kelch-repeat protein At1g55270

      UniProtKB/TrEMBL
      A3C4N2, Q0IXS7, Q7XES2
      Conserved Domains (3) summary
      PHA03098
      Location:175 → 348
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:174 → 217
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:81 → 118
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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