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    LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327790, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327790
    Gene description
    probable 2-carboxy-D-arabinitol-1-phosphatase
    Locus tag
    OSNPB_010237100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 150.9), roots after flowering (RPKM 142.8) and 3 other tissues See more
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    Genomic context

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    See LOC4327790 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7601513..7603830, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7590426..7592946, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene beta-amylase 1, chloroplastic-like Neighboring gene CASP-like protein 1C1 Neighboring gene uncharacterized LOC136356325 Neighboring gene isoflavone reductase-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 2-carboxy-D-arabinitol-1-phosphatase
    Names
    OSJNBa0086P08.1
    Os01g0237100
    P0708G02.37
    phosphoglycerate mutase -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7601513..7603830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771475.3 → XP_015626961.1  probable 2-carboxy-D-arabinitol-1-phosphatase

      UniProtKB/TrEMBL
      A0A8J8YBI2, B8ABG3, Q0JP81, Q5NAM1, Q5NB80
      Conserved Domains (1) summary
      pfam00300
      Location:98 → 290
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
    Nucleotide Protein
    Heading Accession and Version

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