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    LOC4342190 putative FBD-associated F-box protein At1g55030 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342190, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342190
    Gene description
    putative FBD-associated F-box protein At1g55030
    Locus tag
    OSNPB_070105200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4342190 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (307223..309422)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (299203..302486)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene blue copper protein Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 12-like Neighboring gene classical arabinogalactan protein 9 Neighboring gene photosynthetic NDH subunit of lumenal location 3, chloroplastic Neighboring gene kinesin-like protein KIN-14N

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative FBD-associated F-box protein At1g55030
    Names
    B1317D11.106
    Os07g0105200
    P0446F04.137
    P0617C02.111

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      307223..309422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790872.3 → XP_015646358.2  putative FBD-associated F-box protein At1g55030

      UniProtKB/TrEMBL
      B8B6J3, B9FV46, Q69RH8, Q8L4Z3
      Conserved Domains (1) summary
      sd00032
      Location:137 → 163
      LRR_2; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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