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    LOC4343609 translation initiation factor IF-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343609, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4343609
    Gene description
    translation initiation factor IF-2
    Locus tag
    OSNPB_070563400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1720_F04.106
    Expression
    Biased expression in mature seeds (RPKM 71.3), milk grains (RPKM 10.4) and 2 other tissues See more
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    Genomic context

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    See LOC4343609 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22543448..22544957, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene sphingosine kinase 1 Neighboring gene B3 domain-containing protein Os07g0563300-like Neighboring gene uncharacterized LOC107281667 Neighboring gene protein FAR1-RELATED SEQUENCE 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    translation initiation factor IF-2; uncharacterized protein LOC4343609
    Names
    Os07g0563400
    putative fiber protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422207.1 → NP_001409136.1  translation initiation factor IF-2

      Status: VALIDATED

      Source sequence(s)
      AK106307
      UniProtKB/TrEMBL
      A2YMN6, B9FXX8, Q0D5G3, Q8H348

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22543448..22544957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790051.2 → XP_015645537.1  uncharacterized protein LOC4343609

      UniProtKB/TrEMBL
      Q8H348
      Conserved Domains (2) summary
      pfam05553
      Location:294 → 327
      DUF761; Cotton fibre expressed protein
      pfam14364
      Location:39 → 71
      DUF4408; Domain of unknown function (DUF4408)
    Nucleotide Protein
    Heading Accession and Version

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