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    LOC9272053 chloroplast sensor kinase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272053, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9272053
    Gene description
    chloroplast sensor kinase, chloroplastic
    Locus tag
    OSNPB_120292900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 10.8), roots after flowering (RPKM 6.5) and 5 other tissues See more
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    Genomic context

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    See LOC9272053 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (11411561..11421868)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (11349798..11360994)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279716 Neighboring gene ribulose bisphosphate carboxylase small subunit, chloroplastic Neighboring gene telomerase reverse transcriptase-like Neighboring gene uncharacterized LOC9266880

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    chloroplast sensor kinase, chloroplastic
    Names
    Os12g0292900
    Os12g0293000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      11411561..11421868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764943.3 → XP_015620429.1  chloroplast sensor kinase, chloroplastic

      UniProtKB/TrEMBL
      B8BP79
      Conserved Domains (2) summary
      PRK11100
      Location:434 → 525
      PRK11100; sensory histidine kinase CreC; Provisional
      pfam02518
      Location:480 → 598
      HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

    2. XM_066306201.1 → XP_066162298.1  chloroplast sensor kinase, chloroplastic

    RNA

    1. XR_010738249.1 RNA Sequence

    2. XR_010738250.1 RNA Sequence

    3. XR_010738252.1 RNA Sequence

    4. XR_010738251.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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