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    LOC4343616 internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343616, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343616
    Gene description
    internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial
    Locus tag
    OSNPB_070564500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E08.115
    Expression
    Biased expression in roots before flowering (RPKM 54.7), leaves before flowering (RPKM 5.4) and 2 other tissues See more
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    Genomic context

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    See LOC4343616 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22847712..22850732)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22619068..22621310)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270338 Neighboring gene uncharacterized LOC107281480 Neighboring gene uncharacterized LOC107281481 Neighboring gene secretory carrier-associated membrane protein 1-like Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADH dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NADH oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial
    Names
    Os07g0564500
    putative NADH dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22847712..22850732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312408.1 → XP_066168505.1  internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0X7V2, A2YMP6, Q8H5X6

    2. XM_015789302.3 → XP_015644788.1  internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0X7V2, A2YMP6, Q8H5X6
      Conserved Domains (1) summary
      PTZ00318
      Location:117 → 561
      PTZ00318; NADH dehydrogenase-like protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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