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    LOC4324523 uncharacterized LOC4324523 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324523, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324523
    Gene description
    uncharacterized LOC4324523
    Locus tag
    OSNPB_010151100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SLT2
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 37.6), roots after flowering (RPKM 34.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324523 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2773754..2776406)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2765732..2768499)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like Neighboring gene inner membrane protein PPF-1, chloroplastic Neighboring gene glutathione hydrolase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324523
    Names
    Os01g0151100
    P0009G03.17
    sodium-lithium tolerant 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2773754..2776406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765957.3 → XP_015621443.1  uncharacterized protein LOC4324523

      UniProtKB/TrEMBL
      A0A0P0UY85, A0A979HL40, A2WKR0, Q0JQM7, Q5ZEI0
      Conserved Domains (1) summary
      cd06464
      Location:418 → 520
      ACD_sHsps-like; Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally ...
    Nucleotide Protein
    Heading Accession and Version

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