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    LOC4341496 fructose-bisphosphate aldolase 5, cytosolic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341496, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4341496
    Gene description
    fructose-bisphosphate aldolase 5, cytosolic
    Locus tag
    OSNPB_060608700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 192.8), roots after flowering (RPKM 63.0) and 4 other tissues See more
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    Genomic context

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    See LOC4341496 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25089088..25091171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24227141..24229229)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270950 Neighboring gene vacuolar protein sorting-associated protein 32 homolog 2 Neighboring gene protein transport protein SFT2 Neighboring gene E3 ubiquitin-protein ligase RGLG2 Neighboring gene uncharacterized LOC107281192

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fructose-bisphosphate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 1,6-bisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fructose-bisphosphate aldolase 5, cytosolic
    Names
    Os06g0608700
    P0556B08.18
    fructose-bisphosphate aldolase, cytoplasmic isozyme 1
    putative fructose-bisphosphate aldolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25089088..25091171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311254.1 → XP_066167351.1  fructose-bisphosphate aldolase 5, cytosolic

      UniProtKB/TrEMBL
      A0A0P0WYX8, B8B4J4, Q69V57
    Nucleotide Protein
    Heading Accession and Version

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