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    LOC4341749 cryptochrome DASH, chloroplastic/mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341749, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4341749
    Gene description
    cryptochrome DASH, chloroplastic/mitochondrial-like
    Locus tag
    OSNPB_060661800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CRYD
    Expression
    Ubiquitous expression in flowers (RPKM 4.9), flower buds (RPKM 4.8) and 6 other tissues See more
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    Genomic context

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    See LOC4341749 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27275473..27278882, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 5 homolog B Neighboring gene uncharacterized LOC9271699 Neighboring gene uncharacterized LOC4341750 Neighboring gene V-type proton ATPase catalytic subunit A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA photolyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photoreactive repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cryptochrome DASH, chloroplastic/mitochondrial
    Names
    LOC_Os06g45100
    OSJNBa0051O02.40
    OSJNBb0065C04.7
    putative cryptochrome dash

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421685.1 → NP_001408614.1  cryptochrome DASH, chloroplastic/mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK072287, CI188080, CI224025, CI303147
      UniProtKB/TrEMBL
      A0A0P0X023

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27275473..27278882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788632.2 → XP_015644118.1  cryptochrome DASH, chloroplastic/mitochondrial isoform X2

      UniProtKB/Swiss-Prot
      Q651U1
      UniProtKB/TrEMBL
      A0A0P0X023
      Conserved Domains (3) summary
      TIGR02765
      Location:84 → 533
      crypto_DASH; cryptochrome, DASH family
      pfam00875
      Location:86 → 261
      DNA_photolyase; DNA photolyase
      pfam03441
      Location:313 → 536
      FAD_binding_7; FAD binding domain of DNA photolyase

    2. XM_015788631.2 → XP_015644117.1  cryptochrome DASH, chloroplastic/mitochondrial isoform X1

      Conserved Domains (1) summary
      TIGR02765
      Location:84 → 533
      crypto_DASH; cryptochrome, DASH family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q651U1.1 GenPept UniProtKB/Swiss-Prot:Q651U1

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