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    LOC4329668 protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329668, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329668
    Gene description
    protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1
    Locus tag
    OSNPB_020556800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_F08.20
    Expression
    Broad expression in leaves before flowering (RPKM 47.4), roots after flowering (RPKM 43.7) and 6 other tissues See more
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    Genomic context

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    See LOC4329668 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21539002..21540564, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21060003..21061650, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ran-binding protein M homolog Neighboring gene uncharacterized LOC4329667 Neighboring gene uncharacterized LOC107280142 Neighboring gene uncharacterized LOC4329669 Neighboring gene tubulin-folding cofactor C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of protein complex stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1
    Names
    Os02g0556800
    proline-rich family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21539002..21540564 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770395.3 → XP_015625881.1  protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1

      UniProtKB/TrEMBL
      A2X624, Q0E0E1, Q6ZI79
    Nucleotide Protein
    Heading Accession and Version

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