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    LOC4341736 auxin efflux carrier component 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341736, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341736
    Gene description
    auxin efflux carrier component 2-like
    Locus tag
    OSNPB_060660200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIN2; OsPIN2
    Expression
    Biased expression in roots before flowering (RPKM 1.3), flower buds (RPKM 0.7) and 2 other tissues See more
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    Genomic context

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    See LOC4341736 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28065737..28069689)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27200814..27204957)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275395 Neighboring gene uncharacterized LOC4341735 Neighboring gene uncharacterized LOC4341738 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice. Wang L, et al. J Exp Bot, 2018 Jan 23. PMID 29294052, Free PMC Article
    2. Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex. Wu D, et al. J Exp Bot, 2015 Nov. PMID 26254327, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A rice mutant large root angle1 (lra1) was isolated and shown to exhibit a large RGA and reduced sensitivity to gravity. Genome resequencing and complementation assays identified OsPIN2 as the gene responsible for the mutant phenotypes. OsPIN2 was mainly expressed in roots and the base of shoots, and showed polar localization in the plasma membrane of root epidermal and cortex cells.
      Title: LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.
    2. The rice OsPIN2 overexpression line OX1 reduced morin staining of cytosolic aluminum, enhanced FM 4-64 staining of membrane vesicular trafficking in root tip sections (0-1mm), and showed morin-FM 4-64 fluorescence overlap.
      Title: Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin efflux carrier component 2
    Names
    Auxin efflux carrier component 2
    LOC_Os06g44970
    OSJNBa0051O02.21
    probable auxin efflux carrier component 2
    putative auxin efflux carrier protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421678.1 → NP_001408607.1  auxin efflux carrier component 2

      Status: VALIDATED

      Source sequence(s)
      AK101191, CI193103
      UniProtKB/Swiss-Prot
      Q0DAE1, Q651V6
      UniProtKB/TrEMBL
      A3BE98

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28065737..28069689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q651V6.1 GenPept UniProtKB/Swiss-Prot:Q651V6

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