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    LOC4333266 CBBY-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333266, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4333266
    Gene description
    CBBY-like protein
    Locus tag
    OSNPB_030565200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 100.0), roots after flowering (RPKM 64.0) and 4 other tissues See more
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    Genomic context

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    See LOC4333266 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (20379575..20387076)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich repeat secretory protein 38 Neighboring gene probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 Neighboring gene uncharacterized LOC4333267 Neighboring gene elongation factor G, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CBBY-like protein
    Names
    Os03g0565200
    haloacid dehalogenase-like hydrolase domain-containing protein At3g48420

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20379575..20387076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772637.2 → XP_015628123.1  CBBY-like protein

      UniProtKB/TrEMBL
      B8AKV0, B9F9B5, Q0DQS5, Q10I42
      Conserved Domains (1) summary
      PLN02779
      Location:38 → 318
      PLN02779; haloacid dehalogenase-like hydrolase family protein
    Nucleotide Protein
    Heading Accession and Version

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