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    LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332690, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4332690
    Gene description
    magnesium-chelatase subunit ChlH, chloroplastic-like
    Locus tag
    OSNPB_030323200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CHLH
    Expression
    Broad expression in roots after flowering (RPKM 91.7), leaves before flowering (RPKM 62.2) and 4 other tissues See more
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    Genomic context

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    See LOC4332690 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11712161..11718963)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein 17-like Neighboring gene uncharacterized LOC112938172 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD14 Neighboring gene chaperone protein dnaJ 20, chloroplastic Neighboring gene mitochondrial import receptor subunit TOM40-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings. Inagaki N, et al. PLoS One, 2015. PMID 26270815, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
      Title: Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium chelatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    magnesium-chelatase subunit ChlH, chloroplastic
    Names
    LOC_Os03g20700
    Mg-chelatase subunit H
    Mg-protoporphyrin IX chelatase subunit ChlH
    XP_025880259.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417629.1 → NP_001404558.1  magnesium-chelatase subunit ChlH, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK067323, AK069545, AP014959, AU101783, CB655839, CB674765, CB678460, CI564281, CI586224
      UniProtKB/Swiss-Prot
      B8ANF1, Q0DSA2, Q10M50

    RNA

    1. NR_184542.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK067323, AK069545, AP014959, CB655839, CB674765, CB678460, CB684805, CI564281, CI586224

    2. NR_184543.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK065420, AK067323, AK069545, AP014959, CB655839, CB678460, CI327813, CI564281, CI586224

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11712161..11718963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024474.1 → XP_025880259.1  magnesium-chelatase subunit ChlH, chloroplastic

      Conserved Domains (1) summary
      PLN03069
      Location:58 → 1266
      PLN03069; magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10M50.1 GenPept UniProtKB/Swiss-Prot:Q10M50

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