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    LOC4344462 protein mago nashi homolog 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344462, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344462
    Gene description
    protein mago nashi homolog 1-like
    Locus tag
    OSNPB_080107900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MAGO1; OsMAGO1
    Expression
    Ubiquitous expression in flower buds (RPKM 20.8), flowers (RPKM 16.6) and 6 other tissues See more
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    Genomic context

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    See LOC4344462 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (389108..393252)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (384073..388318)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein Rf1, mitochondrial Neighboring gene protein Rf1, mitochondrial-like Neighboring gene pectinesterase inhibitor 28-like Neighboring gene chromatin assembly factor 1 subunit FAS2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode. Gong P, et al. PLoS One, 2014. PMID 24416299, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein mago nashi homolog 1
    Names
    Mago nashi-like protein 1
    Os08g0107900
    Os08g0108001
    P0450B04.29
    Protein mago nashi homolog 1
    mago nashi-1 protein
    putative mago nashi

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422874.1 → NP_001409803.1  protein mago nashi homolog 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AU100960, CI744111
      UniProtKB/Swiss-Prot
      A0A023T664, A0A0P0XB70, B7FAC2, Q0J8J9, Q6ZD65
      UniProtKB/TrEMBL
      B9FYP7

    2. NM_001422875.1 → NP_001409804.1  protein mago nashi homolog 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AU100960, CI744111, CI771061
      UniProtKB/TrEMBL
      B9FYP7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      389108..393252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0P0XB70.1 GenPept UniProtKB/Swiss-Prot:A0A0P0XB70

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