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    LOC4324941 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324941, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324941
    Gene description
    bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
    Locus tag
    OSNPB_010871300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 26.5), flower buds (RPKM 23.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324941 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37779495..37782865)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene phospholipase ABHD3 Neighboring gene zinc finger protein STOP1 homolog Neighboring gene uncharacterized LOC9270135 Neighboring gene protein NRT1/ PTR FAMILY 5.10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
    Names
    OSJNBb0008G24.9
    Os01g0871300
    P0039A07.25
    putative aspartate aminotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37779495..37782865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785846.2 → XP_015641332.1  bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase

      UniProtKB/TrEMBL
      A0A0P0VB27, A0A0P0VB29, A2WXF0, A3A017, Q5N9Z8
      Conserved Domains (1) summary
      PRK05764
      Location:54 → 452
      PRK05764; aspartate aminotransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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