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    LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332615, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332615
    Gene description
    ATP-dependent Clp protease proteolytic subunit 5, chloroplastic
    Locus tag
    OSNPB_030308100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 60.1), flower buds (RPKM 44.0) and 6 other tissues See more
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    Genomic context

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    See LOC4332615 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11020220..11023187, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10966799..10969821, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase EZ1-like Neighboring gene ubiquitin-conjugating enzyme E2 32 Neighboring gene protein SEMI-ROLLED LEAF 2-like Neighboring gene DEAD-box ATP-dependent RNA helicase 24-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. Tsugane K, et al. Plant J, 2006 Jan. PMID 16367953
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of endopeptidase Clp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease proteolytic subunit 5, chloroplastic
    Names
    ATP-dependent protease
    Os03g0308100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11020220..11023187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772777.3 → XP_015628263.1  ATP-dependent Clp protease proteolytic subunit 5, chloroplastic

      UniProtKB/TrEMBL
      A0A5S6R775, B9F7Y8, Q0DSH2, Q50LH5
      Conserved Domains (1) summary
      PRK00277
      Location:89 → 268
      clpP; ATP-dependent Clp protease proteolytic subunit; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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