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    LOC4330726 RINT1-like protein MAG2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330726, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330726
    Gene description
    RINT1-like protein MAG2
    Locus tag
    OSNPB_020748100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 9.7), leaves after flowering (RPKM 9.6) and 6 other tissues See more
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    Genomic context

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    See LOC4330726 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31928024..31933319, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31432557..31438035, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene AP2-like ethylene-responsive transcription factor PLT1 Neighboring gene transcription factor ILI5 Neighboring gene F-box/kelch-repeat protein At1g74510 Neighboring gene uncharacterized protein At3g28850

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of ER to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Dsl1/NZR complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RINT1-like protein MAG2
    Names
    OSJNBa0078N11.28-1
    OSJNBa0078N11.28-2
    Os02g0748100
    chromosome structural maintenance protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31928024..31933319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771972.3 → XP_015627458.1  RINT1-like protein MAG2 isoform X2

      UniProtKB/TrEMBL
      B8AIU8
      Conserved Domains (1) summary
      pfam04437
      Location:291 → 775
      RINT1_TIP1; RINT-1 / TIP-1 family

    2. XM_015771975.3 → XP_015627461.1  RINT1-like protein MAG2 isoform X4

      UniProtKB/TrEMBL
      B8AIU8
      Conserved Domains (1) summary
      pfam04437
      Location:229 → 713
      RINT1_TIP1; RINT-1 / TIP-1 family

    3. XM_066307915.1 → XP_066164012.1  RINT1-like protein MAG2 isoform X8

    4. XM_015771971.3 → XP_015627457.1  RINT1-like protein MAG2 isoform X1

      UniProtKB/TrEMBL
      B8AIU8, B9F2Z8, Q6YUW7
      Conserved Domains (1) summary
      pfam04437
      Location:445 → 778
      RINT1_TIP1; RINT-1 / TIP-1 family

    5. XM_015771973.3 → XP_015627459.1  RINT1-like protein MAG2 isoform X3

      UniProtKB/TrEMBL
      B8AIU8
      Conserved Domains (1) summary
      pfam04437
      Location:232 → 716
      RINT1_TIP1; RINT-1 / TIP-1 family

    6. XM_066307912.1 → XP_066164009.1  RINT1-like protein MAG2 isoform X5

    7. XM_066307913.1 → XP_066164010.1  RINT1-like protein MAG2 isoform X7

    8. XM_015771977.3 → XP_015627463.1  RINT1-like protein MAG2 isoform X6

      UniProtKB/TrEMBL
      B8AIU8
      Conserved Domains (1) summary
      pfam04437
      Location:187 → 671
      RINT1_TIP1; RINT-1 / TIP-1 family

    9. XM_015771978.3 → XP_015627464.1  RINT1-like protein MAG2 isoform X9

      UniProtKB/TrEMBL
      A0A0P0VPU2, Q6YUW6

    RNA

    1. XR_010739614.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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