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    LOC4341937 uncharacterized LOC4341937 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341937, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341937
    Gene description
    uncharacterized LOC4341937
    Locus tag
    OSNPB_060695700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 7.7), roots before flowering (RPKM 6.0) and 1 other tissue See more
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    Genomic context

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    See LOC4341937 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29935255..29938436)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29068568..29071755)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene peroxidase 16 Neighboring gene uncharacterized LOC4341936 Neighboring gene protein STAR1-like Neighboring gene RING-H2 finger protein ATL43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341937
    Names
    Os06g0695700
    P0622F03.25
    proteoglycan 4
    putative neurofilament triplet H1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29935255..29938436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786388.3 → XP_015641874.1  uncharacterized protein LOC4341937

      UniProtKB/TrEMBL
      A2YGK6, A3BEZ9, Q5Z8H3
      Conserved Domains (2) summary
      PRK10811
      Location:332 → 490
      rne; ribonuclease E; Reviewed
      cl23944
      Location:564 → 592
      CaM_binding; Plant calmodulin-binding domain

    2. XM_015786389.3 → XP_015641875.1  uncharacterized protein LOC4341937

      UniProtKB/TrEMBL
      A2YGK6, A3BEZ9, Q5Z8H3
      Conserved Domains (2) summary
      PRK10811
      Location:332 → 490
      rne; ribonuclease E; Reviewed
      cl23944
      Location:564 → 592
      CaM_binding; Plant calmodulin-binding domain
    Nucleotide Protein
    Heading Accession and Version

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