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    LOC4325715 probable glutathione S-transferase GSTF1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325715, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325715
    Gene description
    probable glutathione S-transferase GSTF1
    Locus tag
    OSNPB_010372400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1045D11.1
    Expression
    Biased expression in leaves after flowering (RPKM 10.8), roots after flowering (RPKM 7.9) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15407564..15409170)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15344358..15345960)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275467 Neighboring gene uncharacterized LOC107281098 Neighboring gene leucoanthocyanidin dioxygenase 1 Neighboring gene uncharacterized LOC136354951

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glutathione S-transferase GSTF1
    Names
    B1039D07.23
    Os01g0372400
    putative glutathione transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      15407564..15409170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786905.3 → XP_015642391.1  probable glutathione S-transferase GSTF1

      UniProtKB/TrEMBL
      B8A893, Q0JMQ0, Q7F6E7, Q93VX8
      Conserved Domains (1) summary
      PLN02395
      Location:4 → 217
      PLN02395; glutathione S-transferase
    Nucleotide Protein
    Heading Accession and Version

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