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    LOC4343029 uncharacterized LOC4343029 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343029, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343029
    Gene description
    uncharacterized LOC4343029
    Locus tag
    OSNPB_070418000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343029 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13443426..13448787, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13287971..13293391, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357247 Neighboring gene uncharacterized LOC107281604 Neighboring gene uncharacterized LOC136357246 Neighboring gene alpha-1,2-galactosyltransferase gmh3 Neighboring gene replication protein A 70 kDa DNA-binding subunit D Neighboring gene uncharacterized LOC9270156

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SNARE complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lytic vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343029
    Names
    Os07g0418000
    P0025D09.105-1
    P0025D09.105-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13443426..13448787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792227.3 → XP_015647713.1  uncharacterized protein LOC4343029 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X5L7, B8ATY0, Q0D6Z0, Q8LHV5

    2. XM_015792230.3 → XP_015647716.1  uncharacterized protein LOC4343029 isoform X4

      UniProtKB/TrEMBL
      B8ATY0

    3. XM_015792228.3 → XP_015647714.1  uncharacterized protein LOC4343029 isoform X3

    4. XM_015792226.3 → XP_015647712.1  uncharacterized protein LOC4343029 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KNB6, Q7F0Q5
    Nucleotide Protein
    Heading Accession and Version

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