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    LOC4327518 WRKY transcription factor WRKY24-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327518, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4327518
    Gene description
    WRKY transcription factor WRKY24-like
    Locus tag
    OSNPB_010826400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY8; WRKY24; OsWRKY24; OsJ_03928
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    Genomic context

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    See LOC4327518 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35972864..35975529)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35347978..35350643)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937451 Neighboring gene uncharacterized LOC4327516 Neighboring gene copper transport protein ATX1 Neighboring gene uncharacterized LOC136354976 Neighboring gene uncharacterized LOC136355502

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice. Amir Hossain M, et al. Plant Mol Biol, 2010 Mar. PMID 20039193
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. isolated and characterized ABF1 (ABA responsive element binding factor 1) gene that encodes a bZIP transcription factor
      Title: The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor WRKY24
    Names
    OSNPB_010826400
    P0439E11.24
    WRKY transcription factor 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406347.1 → NP_001393276.1  WRKY transcription factor WRKY24

      Status: VALIDATED

      Source sequence(s)
      AK107199, CI245735, CI580125
      UniProtKB/Swiss-Prot
      Q6IEQ7, Q7XAA7, Q94D89

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35972864..35975529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IEQ7.1 GenPept UniProtKB/Swiss-Prot:Q6IEQ7

    Gene LinkOut

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    Research Materials