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    LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342480, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342480
    Gene description
    proline--tRNA ligase, chloroplastic/mitochondrial
    Locus tag
    OSNPB_070165000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 37.1), leaves after flowering (RPKM 24.2) and 6 other tissues See more
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    Genomic context

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    See LOC4342480 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3541161..3545935)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3481113..3485918)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein PXR1 Neighboring gene indole-3-acetaldehyde oxidase Neighboring gene multiple C2 domain and transmembrane region protein 16 Neighboring gene uncharacterized LOC4342482

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proline-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in prolyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aminoacyl-tRNA synthetase multienzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline--tRNA ligase, chloroplastic/mitochondrial
    Names
    Os07g0165000
    P0039H02.111
    putative prolyl-tRNA synthetase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3541161..3545935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792336.3 → XP_015647822.1  proline--tRNA ligase, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      B9FVN3, Q7XID8
      Conserved Domains (1) summary
      PRK08661
      Location:68 → 545
      PRK08661; prolyl-tRNA synthetase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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