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    LOC4327977 amino acid transporter AVT1C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327977, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327977
    Gene description
    amino acid transporter AVT1C
    Locus tag
    OSNPB_020101000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 29.1), roots before flowering (RPKM 24.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327977 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (50256..55902, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327976 Neighboring gene transcriptional regulator SUPERMAN Neighboring gene translation initiation factor IF3-1, mitochondrial Neighboring gene GDSL esterase/lipase EXL3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter AVT1C
    Names
    B1370C05.10-1
    B1370C05.10-2
    Os02g0101000
    amino acid transporter-like protein
    putative amino acid transport protein
    vacuolar amino acid transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      50256..55902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771952.2 → XP_015627438.1  amino acid transporter AVT1C isoform X2

      UniProtKB/TrEMBL
      B8AGU6, B9F1N2, Q6YU97, T2C8N9
      Conserved Domains (1) summary
      cl00456
      Location:184 → 560
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_015771950.2 → XP_015627436.1  amino acid transporter AVT1C isoform X1

      UniProtKB/TrEMBL
      T2C8N9
      Conserved Domains (1) summary
      cl00456
      Location:184 → 563
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_015771953.2 → XP_015627439.1  amino acid transporter AVT1C isoform X3

      UniProtKB/TrEMBL
      T2C8N9
      Conserved Domains (2) summary
      COG0814
      Location:186 → 547
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:184 → 559
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_015771949.2 → XP_015627435.1  amino acid transporter AVT1C isoform X1

      UniProtKB/TrEMBL
      T2C8N9
      Conserved Domains (1) summary
      cl00456
      Location:184 → 563
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    5. XM_015771951.2 → XP_015627437.1  amino acid transporter AVT1C isoform X2

      UniProtKB/TrEMBL
      B8AGU6, B9F1N2, Q6YU97, T2C8N9
      Conserved Domains (1) summary
      cl00456
      Location:184 → 560
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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