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    LOC4346400 protein DCL homolog, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346400, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346400
    Gene description
    protein DCL homolog, chloroplastic
    Locus tag
    OSNPB_090112400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 9.5), flowers (RPKM 9.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5026503..5032229, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1006806..1012553, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351898 Neighboring gene uncharacterized LOC136351899 Neighboring gene F-box protein At1g47056 Neighboring gene uncharacterized LOC136351745

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chloroplast rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DCL homolog, chloroplastic
    Names
    Os09g0112400
    P0646B04.37
    protein DCL, chloroplastic
    putative DCL protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      5026503..5032229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755402.3 → XP_015610888.1  protein DCL homolog, chloroplastic

      UniProtKB/TrEMBL
      B8BCX9, B9G248, Q6YXA0
      Conserved Domains (1) summary
      pfam11523
      Location:54 → 130
      DUF3223; Protein of unknown function (DUF3223)
    Nucleotide Protein
    Heading Accession and Version

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