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    LOC4326794 uncharacterized LOC4326794 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326794, updated on 1-Aug-2024

    Summary

    Gene symbol
    LOC4326794
    Gene description
    uncharacterized LOC4326794
    Locus tag
    OSNPB_010935600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 51.4), roots after flowering (RPKM 20.6) and 6 other tissues See more
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    Genomic context

    See LOC4326794 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41711361..41717622, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41066990..41073393, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein LATERAL BRANCHING OXIDOREDUCTASE 1 Neighboring gene probable potassium transporter 2 Neighboring gene cytochrome c1-2, heme protein, mitochondrial Neighboring gene probable leucine-rich repeat receptor-like protein kinase At5g49770

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4326794
    Names
    Os01g0935600
    P0492G09.25
    sperm protein-like
    spermatogenesis-associated protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41711361..41717622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761935.3XP_015617421.1  uncharacterized protein LOC4326794 isoform X2

      UniProtKB/TrEMBL
      B9EW27
      Conserved Domains (1) summary
      COG1331
      Location:71812
      YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]
    2. XM_026022458.2XP_025878243.1  uncharacterized protein LOC4326794 isoform X1

      UniProtKB/TrEMBL
      B9EW27
      Conserved Domains (1) summary
      COG1331
      Location:71817
      YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]
    3. XM_066306765.1XP_066162862.1  uncharacterized protein LOC4326794 isoform X4

      UniProtKB/TrEMBL
      B9EW27
    4. XM_026022459.2XP_025878244.1  uncharacterized protein LOC4326794 isoform X3

      UniProtKB/TrEMBL
      B9EW27
      Conserved Domains (1) summary
      COG1331
      Location:1655
      YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]