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    LOC9269039 protein PELOTA 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269039, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269039
    Gene description
    protein PELOTA 1
    Locus tag
    OSNPB_040659900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    24K23.19
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 19.6), roots after flowering (RPKM 19.2) and 6 other tissues See more
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    Genomic context

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    See LOC9269039 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34184918..34192805)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33665013..33672917)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene probable amino acid permease 7 Neighboring gene uncharacterized LOC136356250 Neighboring gene transcription factor IBH1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway. Zhang XB, et al. J Integr Plant Biol, 2018 Feb. PMID 29193778
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. rice PELOTA protein is involved in bacterial leaf blight resistance by activating the salicylic acid metabolic pathway.
      Title: A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in RNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nonfunctional rRNA decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, no-go decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PELOTA 1
    Names
    Os04g0659900
    putative pelota

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34184918..34192805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781678.3 → XP_015637164.1  protein PELOTA 1 isoform X1

      UniProtKB/TrEMBL
      B9FCY1, Q7XR03, Q8S3N8
      Conserved Domains (1) summary
      COG1537
      Location:1 → 371
      PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

    2. XM_066309633.1 → XP_066165730.1  protein PELOTA 1 isoform X2

    RNA

    1. XR_001545653.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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