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    LOC4331333 phosphoglucan phosphatase DSP4, amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331333, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331333
    Gene description
    phosphoglucan phosphatase DSP4, amyloplastic
    Locus tag
    OSNPB_030107800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 346.5), roots after flowering (RPKM 215.6) and 5 other tissues See more
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    Genomic context

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    See LOC4331333 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (471453..476759, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene UPF0548 protein At2g17695 Neighboring gene cyclin-dependent protein kinase inhibitor EL2-like Neighboring gene probable glucuronosyltransferase Os03g0107900 Neighboring gene arsenate reductase 2.2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in starch catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoglucan phosphatase DSP4, amyloplastic
    Names
    Os03g0107800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      471453..476759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776066.2 → XP_015631552.1  phosphoglucan phosphatase DSP4, amyloplastic isoform X1

      UniProtKB/TrEMBL
      Q10SX9, Q10SY1
      Conserved Domains (2) summary
      cd02859
      Location:246 → 327
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      cd14526
      Location:86 → 232
      DSP_laforin-like; dual specificity phosphatase domain of laforin and similar domains

    2. XM_015776065.2 → XP_015631551.1  phosphoglucan phosphatase DSP4, amyloplastic isoform X1

      UniProtKB/TrEMBL
      Q10SX9, Q10SY1
      Conserved Domains (2) summary
      cd02859
      Location:246 → 327
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      cd14526
      Location:86 → 232
      DSP_laforin-like; dual specificity phosphatase domain of laforin and similar domains

    3. XM_015776067.1 → XP_015631553.1  phosphoglucan phosphatase DSP4, amyloplastic isoform X2

      UniProtKB/TrEMBL
      Q10SX9, Q10SY0
      Conserved Domains (2) summary
      cd02859
      Location:228 → 309
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      cl21483
      Location:73 → 207
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    RNA

    1. XR_003241488.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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